Homemade Blackberry, Lemon & Thyme Muffins: Your Ultimate Coffee Shop Experience
Imagine starting your day with a warm, fragrant muffin that tastes like it came straight from a gourmet bakery. These Blackberry, Lemon & Thyme Muffins bring that luxurious coffee shop experience right into your kitchen, allowing you to savor every bite at your favorite table. It’s more than just a muffin; it’s a moment of pure bliss, crafted by your own hands.
While blueberries often steal the spotlight, blackberries are in season and offer a unique, tart-sweetness that truly shines in this recipe. The unexpected addition of fresh lemon zest and aromatic thyme elevates these muffins, transforming them into a sophisticated treat that stands out from the crowd. This combination of flavors creates a harmonious balance—the juicy burst of blackberries, the bright tang of lemon, and the subtle, earthy undertones of thyme—making each bite an unforgettable experience.
The Origin of This Exquisite Muffin Recipe
This remarkable recipe is an adaptation from a 2012 issue of Bon Appétit magazine. It was originally created by Elizabeth Belkind of Cake Monkey, a renowned bakery in Los Angeles, celebrated for its appetizing and beautifully crafted baked goods. Her original creation used decorative paper molds, readily available at kitchen or restaurant supply stores, adding a touch of elegance to each muffin. Whether you opt for large, bakery-style muffins or smaller, more traditional ones, this versatile recipe can be easily adjusted. Simply modify the amount of batter and crumble topping for each muffin, and make small tweaks to the baking time to achieve perfection.
Mastering the Muffin: Why Cake Flour Makes All the Difference
The Importance of Cake Flour for Tender Muffins
One key ingredient in achieving the exceptionally tender texture of these muffins is cake flour. Unlike all-purpose flour, cake flour has a lower protein content, which means less gluten development. This results in a softer, more delicate crumb that truly sets these muffins apart. While it might not be a staple in every pantry, or easily found in all local stores, its impact on the final product is undeniable.
Easy DIY Cake Flour Substitute
Don’t have cake flour on hand or prefer not to order it online? No problem! You can easily create a homemade substitute that works beautifully. As advised by baking expert Joy from Joy the Baker, the process is simple:
- Measure and Adjust: Start with 1 cup of all-purpose flour. Then, remove exactly 2 tablespoons of this flour and return it to your flour container.
- Introduce Cornstarch: Replace the removed all-purpose flour with 2 tablespoons of cornstarch. Cornstarch is a pure starch that helps to tenderize baked goods and mimic the low-gluten properties of cake flour.
- Sift, Sift, Sift (Five Times!): This step is crucial. Sift the flour and cornstarch mixture a total of five times. This isn’t an exaggeration; repeated sifting is essential. It thoroughly combines the cornstarch with the flour, ensuring even distribution. More importantly, it lightens and aerates the mixture significantly, creating that delicate, fluffy texture desired in cake flour.
By replacing a small amount of all-purpose flour with cornstarch, you’re effectively reducing the gluten content of your flour, leading to a wonderfully soft and tender muffin. For those who prioritize quality, my preferred flour supplier, Sunrise Flour Mill, offers wholesome Heritage White Flour, which I use with cornstarch to create my own cake flour substitute whenever this recipe calls for it. This ensures a consistent, high-quality base for these incredible muffins.
Crafting That Amazing Crumble Topping
A truly exceptional muffin often features a delightful crumble topping, and this recipe is no exception. This crumbly, buttery, slightly sweet topping adds texture and an extra layer of flavor that beautifully complements the moist muffin beneath. Here’s how to create it:
- Combine Dry Ingredients: In a medium bowl, whisk together the cake flour (or your homemade substitute), sugar, fresh thyme, baking powder, and salt. This ensures all the dry components are well distributed before adding the fat.
- Incorporate Cold Butter: Add the chilled unsalted butter cubes to the dry mixture. Cold butter is essential here; it prevents the butter from melting too quickly and allows for the formation of distinct, flaky crumbs.
- Create Pea-Size Lumps: Using your fingertips, gently rub the butter into the flour mixture until small, pea-sized lumps form. This technique is similar to making pie crust and is key to a perfectly crumbly topping.
- Add Egg Yolk: Stir in the large egg yolk. This will help bind the mixture slightly, creating moist clumps that bake into a wonderful, crunchy topping. The crumble should resemble a mix of small pebbles and coarse sand.
- Chill for Best Results: Chill the crumble for at least one hour. This step is vital as it re-chills the butter, preventing it from melting too quickly in the oven and ensuring a crisp, distinct crumble.
- Make Ahead Option: For added convenience, you can prepare the crumble topping up to three days in advance. Simply cover it tightly and keep it chilled in the refrigerator until you’re ready to bake your muffins.
Preparing the Muffin Batter: Key Steps for a Perfect Bake
With your crumble topping chilled and ready, it’s time to prepare the star of the show: the rich, moist muffin batter. Precision and technique here ensure a light, fluffy texture that perfectly cradles the juicy blackberries.
- Preheat and Prepare Pans: Preheat your oven to 325°F (160°C). If you’re aiming for large, bakery-style muffins, line a baking sheet with parchment paper and place empty muffin molds (such as these 5-ounce paper muffin molds) directly on the sheet. For standard-sized muffins, line 16 1/3-cup muffin molds with paper liners.
- Whisk Dry Ingredients: In a medium bowl, combine 1 cup plus 2 tablespoons of all-purpose flour (remembering to keep the extra 2 tablespoons separate for later use with the berries), the cake flour (or your homemade substitute), baking powder, baking soda, and kosher salt. Whisk these dry ingredients thoroughly to ensure leavening agents are evenly distributed, then set aside.
- Cream Butter and Sugar: In a separate large bowl, use an electric mixer to beat the room temperature butter until it’s pale and creamy, about 2 minutes. Gradually add the sugar and continue beating for another 2-3 minutes until the mixture is light, fluffy, and well incorporated. This creaming process adds air, contributing to the muffins’ light texture.
- Incorporate Eggs and Vanilla: Whisk the eggs and vanilla extract in a small bowl until blended. Gradually add this mixture to the butter and sugar, beating constantly for 3-4 minutes until it’s light and fluffy. This step creates an emulsion, making the batter smooth and rich.
- Add Wet and Dry Ingredients Alternately: In another small bowl, combine the buttermilk and lemon zest. Gradually beat this buttermilk mixture into the butter mixture. Finally, add the dry ingredients to the wet mixture. Beat just until blended. It’s crucial not to overmix the batter at this stage, as overmixing can develop too much gluten, resulting in tough muffins. A few lumps are perfectly fine!
Some Berry & Herb Banter: The Flavorful Finish
The star ingredients—blackberries and thyme—are folded in at the very end to preserve their delicate structure and vibrant flavor. To ensure they distribute evenly throughout the batter and don’t sink to the bottom during baking, you’ll first gently toss the halved blackberries and fresh thyme with the reserved 2 tablespoons of all-purpose flour. This light coating helps the berries suspend in the batter.
Once coated, carefully fold them into the prepared muffin batter. Don’t worry if some of the blackberries get slightly crushed in the process; their delicious juices will release and further moisten and flavor the batter, creating beautiful streaks of purple and an even deeper berry essence. The fresh thyme contributes an aromatic, subtly herbal note that beautifully complements the sweetness of the berries and the tang of the lemon, adding a layer of sophisticated flavor.
While this recipe highlights the unique combination of blackberries, lemon, and thyme, there’s no reason not to get creative! Feel free to customize these muffins by substituting other berries like blueberries or raspberries. Or, for an extra burst of flavor and color, why not try a combination of all three? This opens up interesting possibilities for future baking adventures!
- Coat Berries: Toss the blackberries and thyme with the reserved 2 tablespoons of flour in a small bowl. This light coating helps prevent the berries from sinking to the bottom of the muffins.
- Gently Fold into Batter: Carefully fold the floured berries and thyme into the prepared batter. As you do this, gently crush a few of the berries. This will release some of their vibrant juices, which will naturally color and flavor the muffin batter, creating delightful swirls and enhancing the overall berry essence.
The Batter Will Be Thick and Creamy, Bursting with Berry Goodness
Once everything is mixed, you’ll notice the batter has a wonderfully thick and creamy consistency. It will be generously studded with blackberries and flecks of fresh thyme, promising a burst of flavor in every bite. This rich texture ensures a moist and satisfying muffin.
Decision Time: Large or Small Muffins?
Now comes the choice that truly personalizes your baking experience: how big do you want your muffins to be? The beauty of this recipe is its adaptability to both generous, bakery-style sizes and more modest, standard portions.
If you aim for the impressive, substantial muffins often found at high-end coffee shops, use 8 large paper muffin molds, each with a capacity of approximately 5 ounces. For effortless cleanup and stability during baking, place these paper cups on a parchment-lined baking sheet. To achieve that coveted “muffin top” effect—a hallmark of a perfectly baked, generously sized muffin—spoon about 2/3 cup of batter into each mold. This amount allows the batter to dome beautifully as it bakes.
Alternatively, if you prefer smaller, more streamlined muffins, fill each mold with about 1/2 cup of batter, or enough to fill it roughly 1/2 to 2/3 full, before adding the crumble topping. This will naturally yield a greater number of muffins, which is certainly not a bad thing, especially if you’re baking for a crowd or prefer smaller portions. For standard-sized muffins, simply line your muffin tins with 16 paper liners as you normally would.
- Fill Molds: Spoon approximately 2/3 cup of batter into each large paper muffin mold. If you’re making standard-sized muffins, divide the batter evenly among the 16 prepared muffin pans.
- Add Crumble: Generously top each large muffin with about 2 tablespoons of the chilled crumble topping. For smaller muffins, use 1 rounded tablespoon of crumble on each.
- Bake to Golden Perfection: Bake the muffins until their tops are golden brown and a wooden skewer or toothpick inserted into the center comes out clean. This indicates they are fully cooked through.
- For large muffins, this will typically take about 50 minutes.
- For standard-size muffins, reduce the baking time to approximately 40 minutes.
- Cooling: Allow the muffins to cool in their pans for at least 20 minutes before attempting to move them. This helps them set and prevents them from falling apart. After 20 minutes, carefully transfer them to a wire rack to cool completely.
- Serve and Store: These Blackberry, Lemon & Thyme Muffins are absolutely delightful served warm, when the flavors are most vibrant and the crumble is at its crispiest. They are also excellent at room temperature. Store any cooled leftover muffins in an airtight container at room temperature. For the best flavor and texture, aim to enjoy them within one day of baking.
Blackberry, Lemon & Thyme Muffins: A Gourmet Treat for Any Time of Day
These exquisite Blackberry, Lemon & Thyme Muffins are a true delight, perfect for a cozy breakfast, an elegant brunch, or a satisfying afternoon treat. Whether you enjoy them warm from the oven, with the crumble still slightly crisp and the berries bursting with flavor, or at room temperature, their complex taste profile and tender crumb will impress.
Once completely cooled, store your muffins in an airtight container at room temperature. For optimal freshness and flavor, it is recommended to enjoy them within one day. The combination of sweet blackberries, zesty lemon, and fragrant thyme makes these muffins a memorable baking project and a delicious indulgence.

Blackberry, Lemon & Thyme Muffins Recipe
Adapted from a recipe by Elizabeth Belkind of Cake Monkey in Los Angeles
Indulge in these amazing homemade Blackberry, Lemon & Thyme Muffins. They’re soft, flavorful, and topped with a perfect crumble, tasting even better than those from your local coffee shop. Ideal for breakfast, brunch, or a sweet treat!
Servings
8
large or 16 standard muffins
Author
Rosemary Stelmach
Ingredients
For the Crumble Topping
- 1 cup cake flour (See Recipe Notes for homemade substitute)
- 1/4 cup sugar
- 1 teaspoon chopped fresh thyme
- 1/2 teaspoon baking powder
- 1/2 teaspoon kosher salt
- 6 tablespoons chilled unsalted butter, cut into 1/4″ cubes (3/4 stick)
- 1 large egg yolk
For the Muffin Batter
- 1 cup plus 2 tablespoons all-purpose flour (separated, 2 tbsp for berries)
- 1 cup cake flour (See Recipe Notes)
- 1 teaspoon baking powder
- 3/4 teaspoon baking soda
- 1 teaspoon kosher salt
- 1/2 cup unsalted butter, room temperature (1 stick)
- 1 cup sugar
- 2 large eggs
- 1 teaspoon vanilla extract
- 1 cup buttermilk
- 2 tablespoons finely grated lemon zest (from about 2 lemons)
- 1 1/2 cups fresh blackberries, halved lengthwise (about 6 ounces)
- 1 teaspoon chopped fresh thyme
Instructions
For the Crumble Topping
- Whisk the first 5 ingredients (cake flour, sugar, thyme, baking powder, salt) in a medium bowl. Add the chilled butter cubes. Using your fingertips, rub in the butter until pea-sized lumps form.
- Add the egg yolk; stir to evenly distribute and form moist clumps. The crumble should resemble a mixture of pebbles and sand.
- Chill for at least 1 hour. (DO AHEAD: Can be made 3 days ahead. Cover and keep chilled.)
For the Muffin Batter
- Preheat oven to 325°F (160°C). If making large muffins, line a baking sheet with parchment paper and place empty muffin molds on the sheet. If making standard-size muffins, line 16 1/3-cup molds with paper liners.
- Whisk 1 cup all-purpose flour and the next 4 ingredients (cake flour, baking powder, baking soda, salt) in a medium bowl and set aside.
- Using an electric mixer, beat room temperature butter until pale and creamy (about 2 minutes). Add sugar and continue beating until well incorporated (2–3 minutes longer). Whisk eggs and vanilla in a small bowl to blend; gradually beat into the butter mixture. Continue beating until light and fluffy (3–4 minutes). Combine buttermilk and lemon zest in a small bowl; gradually beat into the butter mixture. Add the dry ingredients; beat just to blend (do not overmix).
- Toss blackberries and thyme with the reserved 2 tablespoons of all-purpose flour in another small bowl; fold into the batter, gently crushing a few berries slightly to release some juices.
- Spoon about 2/3 cup batter into large paper muffin molds, or divide evenly between prepared standard muffin pans. Top each large muffin with 2 tablespoons of crumble or each small muffin with 1 rounded tablespoon of crumble.
- Bake until tops are golden brown and a tester inserted into the center comes out clean. This will be about 50 minutes for large muffins and 40 minutes for standard-size muffins. Let cool in the pan for at least 20 minutes, then transfer muffins to a wire rack to cool completely. Serve warm or at room temperature.
- Store cooled muffins in an airtight container at room temperature. Best if enjoyed within one day.
Recipe Notes
Need to make your own cake flour?
- Measure out 1 cup of all-purpose flour. Remove 2 tablespoons of all-purpose flour and place it back in your flour canister. Replace the removed all-purpose flour with 2 tablespoons of cornstarch.
- Sift the flour mixture a total of 5 times. Sifting the flour and cornstarch together repeatedly helps thoroughly combine the mixture, and most importantly, it lightens and aerates the flour, mimicking the texture of commercial cake flour. This step is crucial for achieving tender muffins.
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More Delightful Muffin Recipes to Explore
If you’ve enjoyed baking these Blackberry, Lemon & Thyme Muffins, you’ll love exploring other variations of this comforting classic. Here are a few more muffin recipes to inspire your next baking adventure, each offering a unique flavor profile and satisfying experience:
- Dark Cocoa Banana Muffins: A rich and chocolatey twist on a classic banana bread, perfect for chocolate lovers.
- Amazing Whole-Grain Muffins: A wholesome and hearty option, packed with goodness and satisfying textures.
- Gluten-Free Coconut Flour Blueberry Muffins: A delicious gluten-free alternative that doesn’t compromise on flavor or moistness.
Happy baking!